IL_5EL4_228

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_228 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.134

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5EL4|1|1G|C|1303
5EL4|1|1G|G|1304
5EL4|1|1G|G|1305
5EL4|1|1G|A|1306
5EL4|1|1G|U|1307
5EL4|1|1G|U|1308
*
5EL4|1|1G|A|1329
5EL4|1|1G|U|1330
5EL4|1|1G|G|1331
5EL4|1|1G|A|1332
5EL4|1|1G|A|1333
5EL4|1|1G|G|1334

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 4A

30S ribosomal protein S13