3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
5EL4|1|1H|A|1379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_287 not in the Motif Atlas
Homologous match to IL_7RQB_052
Geometric discrepancy: 0.0651
The information below is about IL_7RQB_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

5EL4|1|1H|C|1351
5EL4|1|1H|U|1352
5EL4|1|1H|A|1353
5EL4|1|1H|A|1354
5EL4|1|1H|G|1355
*
5EL4|1|1H|C|1376
5EL4|1|1H|G|1377
5EL4|1|1H|A|1378
5EL4|1|1H|A|1379
5EL4|1|1H|G|1380

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain P8
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2468 s