IL_5EL4_289

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

5EL4|1|1H|C|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_289 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.2165

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5EL4|1|1H|U|1415
5EL4|1|1H|G|1416
*
5EL4|1|1H|C|1582
5EL4|1|1H|A|1583
5EL4|1|1H|C|1585
5EL4|1|1H|A|1586
5EL4|1|1H|A|1587

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains