IL_5EL4_320

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

5EL4|1|1H|C|2111, 5EL4|1|1H|G|2112, 5EL4|1|1H|U|2113, 5EL4|1|1H|A|2117, 5EL4|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_320 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2315

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5EL4|1|1H|G|2110
5EL4|1|1H|C|2111
5EL4|1|1H|G|2112
5EL4|1|1H|U|2113
5EL4|1|1H|A|2114
5EL4|1|1H|G|2115
5EL4|1|1H|G|2116
5EL4|1|1H|A|2117
5EL4|1|1H|U|2118
5EL4|1|1H|A|2119
5EL4|1|1H|G|2120
5EL4|1|1H|G|2121
*
5EL4|1|1H|C|2177
5EL4|1|1H|C|2178
5EL4|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1