IL_5EL4_338

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_338 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1309

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5EL4|1|1H|C|2652
5EL4|1|1H|U|2653
5EL4|1|1H|A|2654
5EL4|1|1H|G|2655
5EL4|1|1H|U|2656
5EL4|1|1H|A|2657
5EL4|1|1H|C|2658
*
5EL4|1|1H|G|2663
5EL4|1|1H|G|2664
5EL4|1|1H|A|2665
5EL4|1|1H|C|2666
5EL4|1|1H|C|2667
5EL4|1|1H|G|2668

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6