IL_5EL5_008

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

5EL5|1|13|G|129|||A, 5EL5|1|13|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_008 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1743

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5EL5|1|13|U|129
5EL5|1|13|G|129|||A
5EL5|1|13|A|130
5EL5|1|13|C|131
*
5EL5|1|13|G|231
5EL5|1|13|G|232

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20