IL_5EL5_044

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_044 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1597

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5EL5|1|13|G|988
5EL5|1|13|C|989
5EL5|1|13|C|990
*
5EL5|1|13|G|1215
5EL5|1|13|G|1216
5EL5|1|13|C|1217

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 5I

30S ribosomal protein S14 type Z

Chain AI

30S ribosomal protein S19