IL_5EL5_208

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_208 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.2687

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5EL5|1|1G|U|603
5EL5|1|1G|G|604
5EL5|1|1G|U|605
*
5EL5|1|1G|G|633
5EL5|1|1G|C|634
5EL5|1|1G|G|635

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 72

30S ribosomal protein S8

Chain 8A

30S ribosomal protein S17