IL_5EL5_308

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_308 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1766

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5EL5|1|1H|G|1478
5EL5|1|1H|G|1479
5EL5|1|1H|G|1480
*
5EL5|1|1H|C|1513
5EL5|1|1H|U|1514
5EL5|1|1H|C|1515

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains