IL_5EL5_336

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGGU*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_336 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3315

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5EL5|1|1H|U|2099
5EL5|1|1H|G|2100
5EL5|1|1H|G|2101
5EL5|1|1H|U|2102
*
5EL5|1|1H|G|2187
5EL5|1|1H|C|2188
5EL5|1|1H|U|2189
5EL5|1|1H|G|2190

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains