IL_5EL5_338

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_338 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.3558

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5EL5|1|1H|C|2107
5EL5|1|1H|C|2108
5EL5|1|1H|U|2109
5EL5|1|1H|G|2110
*
5EL5|1|1H|C|2179
5EL5|1|1H|U|2180
5EL5|1|1H|G|2181
5EL5|1|1H|G|2182

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 71

50S ribosomal protein L1