IL_5EL5_383

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5EL5|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_383 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1652

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5EL5|1|14|C|844
5EL5|1|14|G|845
5EL5|1|14|C|846
5EL5|1|14|U|847
5EL5|1|14|G|848
5EL5|1|14|A|849
5EL5|1|14|C|850
*
5EL5|1|14|G|928
5EL5|1|14|G|929
5EL5|1|14|U|930
5EL5|1|14|G|931
5EL5|1|14|G|932
5EL5|1|14|A|933
5EL5|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30