IL_5EL5_385

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCCA*UGCG

Length

9 nucleotides

Bulged bases

5EL5|1|14|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_385 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3248

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5EL5|1|14|C|992
5EL5|1|14|G|993
5EL5|1|14|C|994
5EL5|1|14|C|995
5EL5|1|14|A|996
*
5EL5|1|14|U|1159
5EL5|1|14|G|1160
5EL5|1|14|C|1161
5EL5|1|14|G|1162

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain H5

50S ribosomal protein L30