IL_5EL5_424
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 5EL5|1|1G|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL5_424 not in the Motif Atlas
- Homologous match to IL_4LFB_037
- Geometric discrepancy: 0.1975
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_61370.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5EL5|1|1G|G|933
5EL5|1|1G|C|934
5EL5|1|1G|A|935
*
5EL5|1|1G|U|1380
5EL5|1|1G|U|1381
5EL5|1|1G|C|1382
5EL5|1|1G|C|1383
5EL5|1|1G|C|1384
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 2L
- Transfer RNA; tRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
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