IL_5EL6_095

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_095 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1955

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5EL6|1|14|G|1002
5EL6|1|14|G|1003
5EL6|1|14|C|1004
*
5EL6|1|14|G|1151
5EL6|1|14|C|1152
5EL6|1|14|C|1153

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 85

50S ribosomal protein L20