IL_5EL6_145

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCC*GGGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCCCC,GGGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_145 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3821

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5EL6|1|14|C|2136
5EL6|1|14|C|2137
5EL6|1|14|C|2138
5EL6|1|14|C|2139
5EL6|1|14|C|2140
*
5EL6|1|14|G|2151
5EL6|1|14|G|2152
5EL6|1|14|G|2153
5EL6|1|14|G|2154
5EL6|1|14|G|2155

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA