IL_5EL6_214

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_214 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3634

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5EL6|1|1G|G|953
5EL6|1|1G|G|954
*
5EL6|1|1G|C|1226
5EL6|1|1G|A|1227
5EL6|1|1G|C|1228

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 2L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13