IL_5EL6_399
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL6_399 not in the Motif Atlas
- Homologous match to IL_9DFE_028
- Geometric discrepancy: 0.1599
- The information below is about IL_9DFE_028
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5EL6|1|14|G|864
5EL6|1|14|C|865
5EL6|1|14|A|866
5EL6|1|14|C|867
5EL6|1|14|U|868
*
5EL6|1|14|A|909
5EL6|1|14|A|910
5EL6|1|14|A|911
5EL6|1|14|C|912
Current chains
- Chain 14
- 23S rRNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain D5
- 50S ribosomal protein L25
Coloring options: