IL_5EL7_021
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL7_021 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.0778
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5EL7|1|13|C|504
5EL7|1|13|G|505
5EL7|1|13|G|506
5EL7|1|13|C|507
5EL7|1|13|C|508
5EL7|1|13|A|509
5EL7|1|13|A|510
5EL7|1|13|C|511
*
5EL7|1|13|G|540
5EL7|1|13|G|541
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
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