3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
5EL7|1|13|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_032 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1141
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

5EL7|1|13|G|683
5EL7|1|13|A|684
5EL7|1|13|G|685
5EL7|1|13|U|686
5EL7|1|13|A|687
5EL7|1|13|G|688
*
5EL7|1|13|C|699
5EL7|1|13|G|700
5EL7|1|13|C|701
5EL7|1|13|A|702
5EL7|1|13|G|703
5EL7|1|13|A|704
5EL7|1|13|U|705
5EL7|1|13|A|706
5EL7|1|13|C|707

Current chains

Chain 13
16S rRNA

Nearby chains

Chain 1H
Large subunit ribosomal RNA; LSU rRNA
Chain 2I
30S ribosomal protein S11

Coloring options:


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