IL_5EL7_100

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUCU*AGC

Length

7 nucleotides

Bulged bases

5EL7|1|14|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_100 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.2246

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5EL7|1|14|G|1011
5EL7|1|14|U|1012
5EL7|1|14|C|1013
5EL7|1|14|U|1014
*
5EL7|1|14|A|1148
5EL7|1|14|G|1149
5EL7|1|14|C|1150

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 85

50S ribosomal protein L20