IL_5EL7_113

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_113 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1496

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5EL7|1|14|U|1357
5EL7|1|14|G|1358
5EL7|1|14|A|1359
5EL7|1|14|A|1360
5EL7|1|14|G|1361
*
5EL7|1|14|C|1370
5EL7|1|14|G|1371
5EL7|1|14|U|1372
5EL7|1|14|A|1373
5EL7|1|14|G|1374

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain F5

50S ribosomal protein L28

Chain L5

50S ribosomal protein L34