IL_5EL7_136

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_136 not in the Motif Atlas

Geometric match to IL_8VTW_074

Geometric discrepancy: 0.1112

The information below is about IL_8VTW_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5EL7|1|14|G|1856
5EL7|1|14|G|1857
5EL7|1|14|G|1858
5EL7|1|14|A|1859
5EL7|1|14|G|1860
*
5EL7|1|14|C|1882
5EL7|1|14|G|1883
5EL7|1|14|A|1884
5EL7|1|14|A|1885
5EL7|1|14|C|1886

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1

Chain F5

50S ribosomal protein L28