IL_5EL7_162

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_162 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.164

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5EL7|1|14|G|2588
5EL7|1|14|A|2589
5EL7|1|14|A|2590
*
5EL7|1|14|U|2604
5EL7|1|14|U|2605
5EL7|1|14|C|2606

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1L

Transfer RNA; tRNA