3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
5EL7|1|1G|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_188 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0884
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

5EL7|1|1G|G|148
5EL7|1|1G|A|149
5EL7|1|1G|C|150
5EL7|1|1G|A|151
5EL7|1|1G|A|152
5EL7|1|1G|C|153
*
5EL7|1|1G|G|168
5EL7|1|1G|C|169
5EL7|1|1G|U|170
5EL7|1|1G|A|171
5EL7|1|1G|A|172
5EL7|1|1G|U|173
5EL7|1|1G|C|174

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain BA
30S ribosomal protein S20

Coloring options:


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