3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_199 not in the Motif Atlas
Geometric match to IL_4LFB_019
Geometric discrepancy: 0.0969
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

5EL7|1|1G|G|450
5EL7|1|1G|A|451
5EL7|1|1G|A|452
5EL7|1|1G|A|453
5EL7|1|1G|C|454
5EL7|1|1G|C|455
*
5EL7|1|1G|G|477
5EL7|1|1G|A|478
5EL7|1|1G|C|479
5EL7|1|1G|U|480
5EL7|1|1G|G|481
5EL7|1|1G|A|482
5EL7|1|1G|C|483

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 7A
30S ribosomal protein S16

Coloring options:


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