IL_5EL7_295

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5EL7|1|1H|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_295 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1116

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5EL7|1|1H|C|1437
5EL7|1|1H|U|1438
5EL7|1|1H|A|1439
5EL7|1|1H|G|1440
*
5EL7|1|1H|C|1551
5EL7|1|1H|G|1552
5EL7|1|1H|A|1553
5EL7|1|1H|A|1554
5EL7|1|1H|G|1555

Current chains

Chain 1H

23S rRNA

Nearby chains