3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CAGAAG*UGGUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_299 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3119
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5EL7|1|1H|C|1468
5EL7|1|1H|A|1469
5EL7|1|1H|G|1470
5EL7|1|1H|A|1471
5EL7|1|1H|A|1472
5EL7|1|1H|G|1473
*
5EL7|1|1H|U|1520
5EL7|1|1H|G|1521
5EL7|1|1H|G|1522
5EL7|1|1H|U|1523
5EL7|1|1H|G|1524

Current chains

Chain 1H
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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