IL_5EL7_326

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCGC,GCGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_326 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.5691

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|1H|G|2104
5EL7|1|1H|C|2105
5EL7|1|1H|G|2106
5EL7|1|1H|C|2107
*
5EL7|1|1H|G|2182
5EL7|1|1H|C|2183
5EL7|1|1H|G|2184
5EL7|1|1H|C|2185

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 71

50S ribosomal protein L1