IL_5EL7_367

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

ACCC*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_367 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2743

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5EL7|1|13|A|185
5EL7|1|13|C|186
5EL7|1|13|C|186|||A
5EL7|1|13|C|186|||B
*
5EL7|1|13|G|191|||E
5EL7|1|13|U|191|||F
5EL7|1|13|G|191
5EL7|1|13|U|192

Current chains

Chain 13

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S20