IL_5EL7_374

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5EL7|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_374 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1565

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5EL7|1|14|C|844
5EL7|1|14|G|845
5EL7|1|14|C|846
5EL7|1|14|U|847
5EL7|1|14|G|848
5EL7|1|14|A|849
5EL7|1|14|C|850
*
5EL7|1|14|G|928
5EL7|1|14|G|929
5EL7|1|14|U|930
5EL7|1|14|G|931
5EL7|1|14|G|932
5EL7|1|14|A|933
5EL7|1|14|G|934

Current chains

Chain 14

23S rRNA

Nearby chains

Chain H5

50S ribosomal protein L30