IL_5EL7_402

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

5EL7|1|14|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_402 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2168

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5EL7|1|14|G|1319
5EL7|1|14|C|1320
5EL7|1|14|A|1321
5EL7|1|14|A|1322
5EL7|1|14|U|1323
*
5EL7|1|14|A|1331
5EL7|1|14|G|1332
5EL7|1|14|C|1333

Current chains

Chain 14

23S rRNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain B5

50S ribosomal protein L23