IL_5F8K_009

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAC*GUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_009 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.1832

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

5F8K|1|1A|C|297
5F8K|1|1A|G|298
5F8K|1|1A|G|299
5F8K|1|1A|A|302
5F8K|1|1A|C|303
*
5F8K|1|1A|G|385
5F8K|1|1A|U|386
5F8K|1|1A|G|387

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains