IL_5F8K_046

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5F8K|1|1A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0459

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5F8K|1|1A|C|1253
5F8K|1|1A|G|1254
5F8K|1|1A|A|1255
5F8K|1|1A|U|1256
5F8K|1|1A|G|1257
5F8K|1|1A|A|1258
5F8K|1|1A|A|1259
5F8K|1|1A|G|1260
*
5F8K|1|1A|U|1280
5F8K|1|1A|G|1281
5F8K|1|1A|G|1282
5F8K|1|1A|A|1283
5F8K|1|1A|G|1284

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20