IL_5F8K_083

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUCG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_083 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.3877

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5F8K|1|1A|G|2123
5F8K|1|1A|U|2124
5F8K|1|1A|C|2125
5F8K|1|1A|G|2126
*
5F8K|1|1A|C|2207
5F8K|1|1A|G|2208
5F8K|1|1A|G|2209
5F8K|1|1A|C|2210

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains