IL_5F8K_260

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_260 not in the Motif Atlas

Geometric match to IL_1MZP_001

Geometric discrepancy: 0.2859

The information below is about IL_1MZP_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

5F8K|1|2A|C|2108
5F8K|1|2A|U|2109
5F8K|1|2A|G|2110
*
5F8K|1|2A|C|2179
5F8K|1|2A|U|2180
5F8K|1|2A|G|2181

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains