IL_5F8K_315

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5F8K|1|2a|A|532, 5F8K|1|2a|U|534, 5F8K|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_315 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0908

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5F8K|1|2a|G|515
5F8K|1|2a|PSU|516
5F8K|1|2a|G|517
5F8K|1|2a|C|518
5F8K|1|2a|C|519
5F8K|1|2a|A|520
5F8K|1|2a|G|521
*
5F8K|1|2a|C|528
5F8K|1|2a|G|529
5F8K|1|2a|G|530
5F8K|1|2a|U|531
5F8K|1|2a|A|532
5F8K|1|2a|A|533
5F8K|1|2a|U|534
5F8K|1|2a|A|535
5F8K|1|2a|C|536

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12