IL_5F8K_324
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5F8K_324 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0814
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5F8K|1|2a|G|673
5F8K|1|2a|G|674
5F8K|1|2a|A|675
5F8K|1|2a|A|676
5F8K|1|2a|U|677
5F8K|1|2a|U|678
*
5F8K|1|2a|A|712
5F8K|1|2a|G|713
5F8K|1|2a|G|714
5F8K|1|2a|A|715
5F8K|1|2a|A|716
5F8K|1|2a|C|717
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2f
- 30S ribosomal protein S6
- Chain 2k
- 30S ribosomal protein S11
- Chain 2r
- 30S ribosomal protein S18
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