IL_5F8K_344
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5F8K|1|2a|U|1257, 5F8K|1|2a|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5F8K_344 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.2361
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5F8K|1|2a|G|1255
5F8K|1|2a|A|1256
5F8K|1|2a|U|1257
5F8K|1|2a|G|1258
*
5F8K|1|2a|C|1277
5F8K|1|2a|U|1278
5F8K|1|2a|A|1279
5F8K|1|2a|A|1280
5F8K|1|2a|U|1281
5F8K|1|2a|C|1282
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
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