IL_5F8K_376

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_376 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2902

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5F8K|1|2A|G|2124
5F8K|1|2A|G|2125
5F8K|1|2A|A|2126
5F8K|1|2A|G|2127
*
5F8K|1|2A|C|2161
5F8K|1|2A|G|2162
5F8K|1|2A|C|2163
5F8K|1|2A|C|2164
5F8K|1|2A|G|2165
5F8K|1|2A|G|2166
5F8K|1|2A|U|2167
5F8K|1|2A|G|2168
5F8K|1|2A|A|2169
5F8K|1|2A|A|2170
5F8K|1|2A|A|2171
5F8K|1|2A|U|2172
5F8K|1|2A|A|2173
5F8K|1|2A|C|2174

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains