IL_5F9R_002
3D structure
- PDB id
- 5F9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUUUU*AAAACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: UGUUUU,AAAACA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5F9R_002 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3607
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5F9R|1|A|U|36
5F9R|1|A|G|37
5F9R|1|A|U|38
5F9R|1|A|U|39
5F9R|1|A|U|40
5F9R|1|A|U|41
*
5F9R|1|A|A|46
5F9R|1|A|A|47
5F9R|1|A|A|48
5F9R|1|A|A|49
5F9R|1|A|C|50
5F9R|1|A|A|51
Current chains
- Chain A
- RNA (116-MER)
Nearby chains
No other chains within 10ÅColoring options: