3D structure

PDB id
5F9R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UGUUUU*AAAACA
Length
12 nucleotides
Bulged bases
None detected
QA status
Self-complementary: UGUUUU,AAAACA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5F9R_002 not in the Motif Atlas
Geometric match to IL_6O5F_001
Geometric discrepancy: 0.3607
The information below is about IL_6O5F_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

5F9R|1|A|U|36
5F9R|1|A|G|37
5F9R|1|A|U|38
5F9R|1|A|U|39
5F9R|1|A|U|40
5F9R|1|A|U|41
*
5F9R|1|A|A|46
5F9R|1|A|A|47
5F9R|1|A|A|48
5F9R|1|A|A|49
5F9R|1|A|C|50
5F9R|1|A|A|51

Current chains

Chain A
RNA (116-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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