IL_5FCI_027

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_027 not in the Motif Atlas

Homologous match to IL_8P9A_255

Geometric discrepancy: 0.0667

The information below is about IL_8P9A_255

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5FCI|1|1|C|803
5FCI|1|1|C|804
5FCI|1|1|G|805
*
5FCI|1|1|C|938
5FCI|1|1|U|939
5FCI|1|1|G|940

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain N8

60S ribosomal protein L28