IL_5FCI_054

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5FCI|1|1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_054 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.135

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5FCI|1|1|G|1207
5FCI|1|1|U|1208
5FCI|1|1|G|1209
*
5FCI|1|1|C|1296
5FCI|1|1|C|1297

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain L9

60S ribosomal protein L9-A

Chain N0

60S ribosomal protein L20-A

Chain Q0

Ubiquitin-60S ribosomal protein L40