3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
8P9A|1|AR|U|1208
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8P9A|1|AR|G|1207
8P9A|1|AR|U|1208
8P9A|1|AR|G|1209
*
8P9A|1|AR|C|1296
8P9A|1|AR|C|1297

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain AS
5S ribosomal RNA; 5S rRNA
Chain CK
60S ribosomal protein L9-A
Chain CU
60S ribosomal protein L20-A
Chain DO
Ubiquitin-60S ribosomal protein L40

Coloring options:

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