IL_5FCI_069

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_069 not in the Motif Atlas

Geometric match to IL_7ECO_005

Geometric discrepancy: 0.1949

The information below is about IL_7ECO_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5FCI|1|1|U|1659
5FCI|1|1|C|1660
5FCI|1|1|G|1661
*
5FCI|1|1|C|1788
5FCI|1|1|G|1789
5FCI|1|1|G|1790

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain Q3

60S ribosomal protein L43-A