IL_5FCI_098

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_098 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.1465

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5FCI|1|1|U|2427
5FCI|1|1|U|2428
5FCI|1|1|G|2429
*
5FCI|1|1|C|2600
5FCI|1|1|A|2601
5FCI|1|1|G|2602

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M5

60S ribosomal protein L15-A