IL_5FCI_122

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

5FCI|1|1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_122 not in the Motif Atlas

Geometric match to IL_8VTW_106

Geometric discrepancy: 0.1928

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5FCI|1|1|G|3102
5FCI|1|1|A|3103
5FCI|1|1|U|3104
5FCI|1|1|U|3105
5FCI|1|1|A|3106
5FCI|1|1|U|3107
*
5FCI|1|1|A|3127
5FCI|1|1|G|3128
5FCI|1|1|A|3129
5FCI|1|1|A|3130
5FCI|1|1|U|3131
5FCI|1|1|C|3132

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

60S ribosomal protein L9-A

Chain M6

60S ribosomal protein L16-A

Chain Q0

Ubiquitin-60S ribosomal protein L40