3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUU*ACU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_155 not in the Motif Atlas
Homologous match to IL_8C3A_406
Geometric discrepancy: 0.1401
The information below is about IL_8C3A_406
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

5FCI|1|2|A|206
5FCI|1|2|U|207
5FCI|1|2|U|208
*
5FCI|1|2|A|257
5FCI|1|2|C|258
5FCI|1|2|U|259

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S4
40S ribosomal protein S4-A
Chain S8
40S ribosomal protein S8-A

Coloring options:


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