IL_5FCI_158

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

5FCI|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_158 not in the Motif Atlas

Geometric match to IL_7ECK_015

Geometric discrepancy: 0.3429

The information below is about IL_7ECK_015

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5FCI|1|2|G|274
5FCI|1|2|C|275
5FCI|1|2|C|276
*
5FCI|1|2|G|279
5FCI|1|2|U|280
5FCI|1|2|G|281
5FCI|1|2|C|282

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A