IL_5FCI_172

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5FCI|1|2|A|619, 5FCI|1|2|A|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_172 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.135

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5FCI|1|2|G|616
5FCI|1|2|U|617
5FCI|1|2|U|618
5FCI|1|2|A|619
5FCI|1|2|A|620
5FCI|1|2|A|621
5FCI|1|2|A|622
*
5FCI|1|2|U|1104
5FCI|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D6

40S ribosomal protein S26-A